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Pigreads 0.5.6.dev1 documentation
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Pigreads 0.5.6.dev1 documentation
  • Mathematical problem definition
  • Technical overview
  • Hands-on example
  • API
    • Models
    • Diffusivity
    • Helper functions
    • Plotting
    • GUI
    • Internals
    • Legacy
  • CLI
  • Models
    • Aliev & Panfilov 1996
    • Bar & Eiswirth 1993
    • Barkley 1991
    • Beeler & Reuter 1977
    • Bueno-Orovio et al. 2008
    • Courtemanche et al. 1998
    • Fenton & Karma 1998
    • Gray & Scott 1982
    • Hodgkin & Huxley 1952
    • Kabus et al. 2024
    • Luo & Rudy 1991
    • Luo & Rudy 1994
    • Majumder et al. 2016
    • Maleckar et al. 2008
    • Marcotte & Grigoriev 2017
    • Mitchell & Schaeffer 2003
    • Nygren et al. 1998
    • Paci et al. 2013
    • Ten Tusscher et al. 2006
    • Tomek et al. 2019
    • Trivial model
  • Schema
    • Simulation
    • Models
    • Diffusivity
    • Stimulus
    • Setters
    • Basic data structures
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Schema¶

Schema to define simulations¶

This submodule provides a Pydantic schema defining a simulation. The schema is used to read and write simulation configuration files in JSON or YAML format.

See pigreads.schema.simulation.Simulation for the main schema.

  • Simulation
  • Models
  • Diffusivity
  • Stimulus
  • Setters
  • Basic data structures
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  • Schema
    • Schema to define simulations